STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL39605.1Peptidase. (547 aa)    
Predicted Functional Partners:
EFL40170.1
M23/M37 family peptidase.
  
     0.763
EFL39604.1
Lipase.
       0.743
EFL39781.1
Peptidase M23B.
  
     0.721
EFL40075.1
Penicillin-binding protein.
  
     0.593
EFL39378.1
Bifunctional penicillin-binding protein 1a/1b pona1.
  
     0.573
EFL40399.1
Penicillin-binding protein.
  
     0.573
EFL39603.1
B12-binding protein.
       0.572
EFL41157.1
Penicillin-binding protein 1.
  
     0.570
secF
Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
 
     0.487
EFL38717.1
GTP diphosphokinase.
  
     0.479
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.