Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL39621.1Conserved hypothetical protein. (345 aa)    
Predicted Functional Partners:
EFL39469.1
Regulatory protein.
  
  
 0.771
EFL39064.1
Conserved hypothetical protein.
  
     0.763
EFL39748.1
Conserved hypothetical protein.
  
     0.738
EFL40125.1
Conserved hypothetical protein.
  
     0.736
EFL40473.1
Conserved hypothetical protein.
  
     0.732
EFL39054.1
Conserved hypothetical protein.
  
     0.730
EFL40786.1
Conserved hypothetical protein.
  
     0.701
EFL38760.1
Sensor histidine kinase/response regulator; Overlaps another CDS with the same product name.
   
 0.675
EFL41190.1
Membrane protein.
  
     0.672
EFL38759.1
Sensor histidine kinase/response regulator; Overlaps another CDS with the same product name.
   
 0.671
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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