STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL39623.1Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (540 aa)    
Predicted Functional Partners:
EFL41278.1
Citrate (Si)-synthase; Belongs to the citrate synthase family.
   
 0.926
EFL39170.1
Oxoglutarate dehydrogenase (succinyl-transferring), E1 component.
  
 0.924
EFL40776.1
Citrate (Si)-synthase; Belongs to the citrate synthase family.
   
 0.924
EFL38809.1
4-aminobutyrate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.921
EFL38072.1
Aminotransferase class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.920
EFL43255.1
Succinate-semialdehyde dehydrogenase [NADP+] (SSDH).
  
  
 
0.918
EFL42655.1
Succinate-semialdehyde dehydrogenase.
  
  
 
0.915
EFL42949.1
Fumarate reductase, flavoprotein subunit.
   
 0.913
EFL39509.1
Aldehyde dehydrogenase; Overlaps another CDS with the same product name.
 
     0.912
EFL39367.1
Fumarate hydratase, class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
   
 
 0.905
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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