STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL39648.1RNA polymerase sigma-70 factor, ECF subfamily; Truncated CDS; Belongs to the sigma-70 factor family. (235 aa)    
Predicted Functional Partners:
EFL43176.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.976
EFL39649.1
DGPF domain-containing protein.
 
     0.913
EFL43175.1
Sigma associated protein.
 
     0.655
EFL41937.1
CalU12 protein.
 
    0.602
EFL43009.1
RNA polymerase sigma-70 factor.
  
   
 0.521
EFL38827.1
Glyoxalase.
 
     0.490
EFL42083.1
Glyoxalase.
 
     0.476
EFL42896.1
Sigma-70 family RNA polymerase sigma factor.
  
   
 0.430
EFL39000.1
Conserved hypothetical protein.
 
     0.428
EFL39650.1
Transcriptional regulator.
       0.416
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.