STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL39649.1DGPF domain-containing protein. (118 aa)    
Predicted Functional Partners:
EFL39648.1
RNA polymerase sigma-70 factor, ECF subfamily; Truncated CDS; Belongs to the sigma-70 factor family.
 
     0.913
EFL43176.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.773
EFL39650.1
Transcriptional regulator.
       0.576
EFL39653.1
Conserved hypothetical protein.
       0.572
tsaD
O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
       0.572
EFL39655.1
Ribosomal-protein-alanine acetyltransferase.
       0.572
EFL39656.1
Peptidase M22, glycoprotease.
       0.572
EFL41937.1
CalU12 protein.
 
    0.532
EFL43442.1
PhnB protein.
 
    0.523
EFL38827.1
Glyoxalase.
 
     0.480
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.