STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL39674.1Integral membrane protein. (410 aa)    
Predicted Functional Partners:
EFL39675.1
Membrane protein.
 
     0.868
EFL39783.1
Conserved hypothetical protein.
  
     0.772
EFL41979.1
Conserved hypothetical protein.
  
     0.769
EFL41178.1
SEC-C domain-containing protein.
  
     0.768
EFL40923.1
Membrane protein.
  
     0.759
EFL40146.1
Conserved hypothetical protein.
  
     0.754
EFL40958.1
Integral membrane protein.
  
     0.748
EFL38398.1
Conserved hypothetical protein.
  
     0.740
EFL43012.1
Conserved hypothetical protein.
  
     0.740
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
       0.730
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.