STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL39740.1NAD dependent epimerase/dehydratase. (218 aa)    
Predicted Functional Partners:
EFL38244.1
Pyruvate dehydrogenase; Belongs to the TPP enzyme family.
   
    0.818
EFL42905.1
Pyruvate dehydrogenase (cytochrome); Belongs to the TPP enzyme family.
   
    0.818
EFL39739.1
Hydrolase; Truncated CDS; unextendable partial coding region.
       0.799
EFL43263.1
Zinc finger CDGSH type superfamily protein.
   
    0.660
arcA
Arginine deiminase.
   
    0.658
EFL38636.1
Permease.
   
    0.658
EFL40163.1
Permease.
   
    0.658
EFL40261.1
Conserved hypothetical protein; Belongs to the UPF0337 (CsbD) family.
   
    0.658
EFL41738.1
Conserved hypothetical protein.
   
    0.658
EFL37904.1
PPOX class F420-dependent enzyme.
  
    0.613
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.