Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL39753.1N- superfamily bifunctional DNA primase/polymerase. (296 aa)    
Predicted Functional Partners:
EFL39754.1
Conserved hypothetical protein.
 
     0.915
EFL40529.1
Conserved hypothetical protein.
 
     0.737
EFL39749.1
Conserved hypothetical protein.
 
     0.729
EFL40910.1
Conserved hypothetical protein.
 
     0.725
EFL39755.1
Conserved domain-containing protein.
 
     0.608
EFL40306.1
DNA-binding protein.
 
     0.576
EFL40530.1
Conserved hypothetical protein.
 
     0.543
EFL40094.1
Conserved hypothetical protein.
 
     0.535
EFL40468.1
Transposase.
  
     0.529
EFL40120.1
Integrase; Belongs to the 'phage' integrase family.
 
     0.523
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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