STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL39798.1Polysaccharide deacetylase. (256 aa)    
Predicted Functional Partners:
EFL39797.1
Glycosyl transferase, family 2.
 
    0.896
EFL41295.1
Polysaccharide deacetylase.
  
     0.766
EFL39796.1
Conserved hypothetical protein.
 
     0.756
EFL39795.1
Hydrolase.
       0.563
EFL42491.1
Chitinase 63; Belongs to the glycosyl hydrolase 18 family.
    
 0.512
EFL40494.1
Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
 
  0.481
EFL42184.1
Succinoglycan biosynthesis protein.
 
    0.415
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.