Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL39830.1Conserved hypothetical protein. (82 aa)    
Predicted Functional Partners:
EFL40261.1
Conserved hypothetical protein; Belongs to the UPF0337 (CsbD) family.
   
  
 0.648
EFL39829.1
Type IV peptidase; Belongs to the peptidase A24 family.
       0.610
EFL37993.1
Peroxiredoxin OsmC (Osmotically-inducible protein C).
   
  
 0.581
EFL41065.1
Organic hydroperoxide resistance protein.
   
  
 0.581
EFL39831.1
Conserved hypothetical protein.
 
      0.531
EFL37611.1
Catalase.
   
  
 0.517
EFL39229.1
Catalase; Belongs to the catalase family.
   
  
 0.517
EFL42901.1
Catalase; Belongs to the catalase family.
   
  
 0.517
rplY
50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
   
  
 0.474
EFL39827.1
Conserved hypothetical protein.
       0.463
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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