Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL39837.1Integral membrane protein; Overlaps another CDS with the same product name. (319 aa)    
Predicted Functional Partners:
EFL39836.1
Integral membrane protein; Overlaps another CDS with the same product name.
 
  
  0.993
EFL39838.1
Type II/IV secretion system protein.
 
 
 0.993
EFL39406.1
Integral membrane protein.
  
 
 0.973
EFL39411.1
Septum site-determining protein; Truncated CDS.
  
 
 0.968
EFL39840.1
Membrane protein.
 
 
  0.964
EFL39839.1
Conserved hypothetical protein.
 
  
 0.962
EFL39412.1
Flp pilus assembly protein CpaB.
  
 
 0.960
EFL39835.1
Conserved hypothetical protein.
 
  
 0.960
EFL39834.1
Septum determining protein.
 
  
 0.946
EFL40053.1
Pilus assembly protein CpaF.
  
 
 0.930
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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