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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL39850.1Hypothetical protein. (419 aa)    
Predicted Functional Partners:
EFL39849.1
RDD family protein.
  
    0.774
EFL39847.1
Hypothetical protein.
       0.773
EFL39848.1
Hypothetical protein.
       0.773
EFL39846.1
Hypothetical protein.
       0.735
EFL38984.1
Secretion protein Snm4.
   
    0.540
EFL42790.1
Secretion protein Snm4.
   
    0.540
EFL38371.1
AP endonuclease, family 2.
   
    0.499
EFL38068.1
Conserved hypothetical protein.
   
 
 0.425
EFL38865.1
Conserved hypothetical protein.
   
 
 0.425
EFL38866.1
Conserved hypothetical protein.
   
 
 0.425
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.