STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL39880.1PE-PGRS family protein. (407 aa)    
Predicted Functional Partners:
EFL42786.1
Regulatory protein AfsR.
 
  
 0.667
EFL39963.1
Serine/threonine protein kinase; Truncated CDS; unextendable partial coding region.
  
     0.650
EFL40961.1
Conserved hypothetical protein.
   
 
 0.637
EFL42265.1
FK-506 binding protein, peptidyl-prolyl cis-trans isomerase.
   
   0.595
EFL42266.1
Peptidyl-prolyl cis-trans isomerase, FKBP-type.
   
   0.595
EFL42800.1
Conserved hypothetical protein.
  
    0.468
EFL38791.1
Zinc metalloprotease.
   
    0.435
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.