Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EFL39891.1Rubrerythrin. (155 aa)    
Predicted Functional Partners:
EFL37975.1
Formate dehydrogenase, beta subunit.
    
 0.804
EFL39385.1
Alkyl hydroperoxide reductase C.
  
  
 0.660
EFL39892.1
Two-component system response regulator TcsR4.
       0.508
EFL39814.1
NADH dehydrogenase I, E subunit.
     
 0.452
EFL39303.1
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
  
 
 0.444
EFL37549.1
Ferric uptake regulation protein; Belongs to the Fur family.
  
  
 0.436
EFL38921.1
Proline dehydrogenase.
     
  0.416
EFL39812.1
NADH-quinone oxidoreductase subunit G (NADHdehydrogenase I subunit G) (NDH-1 subunit G); Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
  0.416
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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