Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL39903.1Transposase. (615 aa)    
Predicted Functional Partners:
EFL43027.1
Integral membrane protein.
  
  
 0.840
EFL41252.1
Conserved hypothetical protein.
 
    0.820
EFL41207.1
Conserved hypothetical protein.
  
    0.805
EFL43121.1
Hypothetical cytosolic protein.
   
    0.758
EFL42840.1
IolB.
   
    0.727
EFL37297.1
IS4 family transposase.
  
     0.691
EFL37261.1
IS4 family Transposase.
  
     0.672
EFL40468.1
Transposase.
  
     0.630
EFL40076.1
Transposase.
  
     0.590
EFL37296.1
Transposase.
  
     0.558
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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