Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL39915.1RtcB. (397 aa)    
Predicted Functional Partners:
EFL42971.1
Conserved hypothetical protein.
  
 0.974
EFL39916.1
Secreted serine-rich protein.
       0.766
EFL39917.1
Secreted protein.
       0.743
EFL38129.1
ATP-dependent RNA helicase.
   
 0.704
EFL39273.1
ATP-dependent RNA helicase DeaD.
   
 0.704
EFL39397.1
Conserved hypothetical protein.
   
 0.704
EFL40257.1
Conserved hypothetical protein.
   
 0.704
EFL40558.1
ATP-dependent RNA helicase.
   
 0.704
EFL42900.1
ATP-dependent RNA helicase.
   
 0.704
EFL37698.1
Conserved hypothetical protein.
  
    0.697
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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