STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL39955.1Isochorismatase. (196 aa)    
Predicted Functional Partners:
EFL39954.1
AraC-family transcriptional regulator.
 
    0.866
EFL38164.1
Isochorismatase.
  
  
 0.746
EFL42516.1
Hydantoinase/oxoprolinase.
    
  0.687
EFL39989.1
L-aspartate oxidase (LASPO) (Quinolinate synthetase B).
   
 0.584
EFL38165.1
2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase.
   
  0.570
EFL37571.1
Phosphoglucomutase, alpha-D-glucose phosphate-specific.
   
  
 0.552
EFL39661.1
YjeF family protein.
   
    0.551
EFL39663.1
YjeF family protein.
   
    0.551
EFL38619.1
Salicylate synthase.
     
 0.546
EFL43503.1
Polyketide synthase type I.
  
 0.536
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.