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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL40088.1LacI family transcriptional regulator; Belongs to the 'phage' integrase family. (425 aa)    
Predicted Functional Partners:
EFL41895.1
Glutamate synthase large subunit.
    
 
 0.897
EFL38677.1
HPr family phosphocarrier.
 
 
 
 0.797
EFL40089.1
Excisionase family DNA binding domain-containing protein.
       0.731
EFL39371.1
Syringomycin synthetase.
    
   0.640
pheT
phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
    
   0.634
ribBA
3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
   0.634
EFL39616.1
GMP synthase.
    
   0.554
EFL39617.1
GMP synthase domain-containing protein.
    
   0.554
EFL37481.1
PTS system, IIBC component.
    
 0.546
EFL42999.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
 
   0.537
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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