STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL40266.1Oxidoreductase. (411 aa)    
Predicted Functional Partners:
EFL40267.1
RNA polymerase ECF-subfamily sigma factor; Belongs to the sigma-70 factor family.
     0.841
gpmA
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
    
   0.792
EFL39765.1
NADH dehydrogenase I, L subunit.
   
 
 0.767
EFL39807.1
NADH-quinone oxidoreductase, L subunit.
   
 
 0.767
EFL37531.1
Hydrogenase maturation protein HupD.
    
 
 0.759
EFL43514.1
Peptidase M52, hydrogen uptake protein.
    
 
 0.759
nuoA
NADH dehydrogenase I, A subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.
   
 
 0.739
EFL37975.1
Formate dehydrogenase, beta subunit.
     
 0.711
EFL39764.1
NADH-quinone oxidoreductase, M subunit.
   
 
 0.708
EFL39806.1
NADH-quinone oxidoreductase, M subunit.
   
 
 0.708
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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