Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL40302.1Conserved hypothetical protein. (274 aa)    
Predicted Functional Partners:
EFL40301.1
Carbon-nitrogen family hydrolase.
       0.753
EFL41324.1
Conserved hypothetical protein; Truncated CDS.
  
     0.702
EFL40207.1
Conserved hypothetical protein.
  
     0.635
EFL39969.1
Alanine-rich protein.
  
     0.578
EFL38959.1
Conserved hypothetical protein.
  
     0.557
EFL42016.1
Conserved hypothetical protein.
  
     0.545
EFL41564.1
Membrane protein.
  
     0.531
EFL41320.1
FHA domain-containing protein.
  
     0.530
EFL41372.1
Rod shape-determining protein MreD.
  
     0.518
EFL40182.1
Conserved hypothetical protein.
  
     0.513
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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