Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL40339.1ABC transporter, ATP-binding protein; Truncated CDS. (240 aa)    
Predicted Functional Partners:
EFL40951.1
ABC lipoprotein transporter, permease component.
 
  0.906
EFL38592.1
Conserved hypothetical protein.
 0.841
EFL41980.1
Integral membrane.
  
  0.756
EFL42613.1
ABC transporter integral membrane protein.
  
  0.756
EFL38794.1
ABC transporter, ATP-binding protein.
  
     0.755
EFL38796.1
ABC transporter, permease.
  
 0.755
EFL42993.1
Transmembrane transporter.
  
  0.744
EFL38635.1
Ferric citrate transport system ATP-binding protein.
 
     0.739
EFL40972.1
ABC transporter integral membrane protein.
 
 
 0.733
EFL40341.1
Integral membrane protein.
  
  0.704
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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