Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFL40364.1DNA-binding protein. (182 aa)    
Predicted Functional Partners:
EFL40365.1
Serine/threonine protein kinase; Unextendable partial coding region.
 
     0.782
EFL40366.1
Membrane protein.
  
     0.704
EFL41966.1
Conserved hypothetical protein.
  
     0.685
EFL41869.1
Conserved hypothetical protein.
  
     0.669
EFL39424.1
Conserved hypothetical protein.
  
     0.655
EFL40282.1
Extracellular small neutral protease; Belongs to the peptidase M7 family.
  
     0.618
EFL41347.1
Conserved hypothetical protein.
  
     0.610
EFL41204.1
M6 family metalloprotease domain-containing protein.
  
     0.608
EFL40210.1
Conserved hypothetical protein.
  
     0.596
EFL38239.1
Iron-sulfur protein.
  
     0.571
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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