Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL40366.1Membrane protein. (465 aa)    
Predicted Functional Partners:
EFL40367.1
Membrane protein.
       0.752
EFL41674.1
Conserved hypothetical protein.
  
     0.749
EFL39192.1
N-acetylmuramoyl-L-alanine amidase.
  
     0.748
EFL39538.1
Conserved hypothetical protein.
  
     0.744
EFL39481.1
Membrane protein.
  
     0.731
EFL39675.1
Membrane protein.
  
  0.727
EFL40779.1
Conserved hypothetical protein.
  
     0.722
EFL39054.1
Conserved hypothetical protein.
  
     0.709
EFL41204.1
M6 family metalloprotease domain-containing protein.
  
     0.709
EFL40364.1
DNA-binding protein.
  
     0.704
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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