Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL40389.1Membrane protein. (304 aa)    
Predicted Functional Partners:
EFL40390.1
RNA polymerase ECF-subfamily sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.912
EFL40391.1
Conserved hypothetical protein.
 
 
   0.912
EFL40393.1
Membrane protein.
 
     0.906
EFL39969.1
Alanine-rich protein.
  
   0.835
EFL42016.1
Conserved hypothetical protein.
  
     0.772
EFL42708.1
Conserved hypothetical protein.
  
     0.767
EFL40392.1
Integral membrane protein MviN.
 
     0.765
EFL41674.1
Conserved hypothetical protein.
  
     0.764
EFL39675.1
Membrane protein.
  
    0.755
EFL42393.1
Membrane protein.
  
     0.753
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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