Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL40391.1Conserved hypothetical protein. (566 aa)    
Predicted Functional Partners:
EFL40392.1
Integral membrane protein MviN.
      0.938
EFL40389.1
Membrane protein.
 
 
   0.912
EFL40390.1
RNA polymerase ECF-subfamily sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.861
EFL40393.1
Membrane protein.
 
     0.725
EFL40352.1
Phosphoprotein phosphatase.
  
   0.722
EFL40388.1
Thioredoxin-disulfide reductase.
       0.710
EFL40365.1
Serine/threonine protein kinase; Unextendable partial coding region.
  
     0.688
EFL40387.1
Thioredoxin; Belongs to the thioredoxin family.
  
    0.687
EFL41074.1
Serine/threonine-protein kinase PkaA; Unextendable partial coding region.
  
     0.683
EFL38760.1
Sensor histidine kinase/response regulator; Overlaps another CDS with the same product name.
   
 0.675
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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