Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EFL40416.1HTH-type transcriptional regulator AraB; Belongs to the LysR transcriptional regulatory family. (301 aa)    
Predicted Functional Partners:
EFL40415.1
NUDIX family hydrolase.
       0.795
EFL40417.1
Cys/Met metabolism PLP-dependent enzyme.
  
    0.729
EFL40418.1
Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
       0.729
EFL40419.1
Membrane protein.
       0.729
EFL40414.1
GNAT family acetyltransferase.
       0.706
EFL40420.1
Cupin domain-containing protein.
       0.684
EFL40421.1
Membrane protein.
       0.644
EFL40422.1
IclR-family transcriptional regulator.
  
    0.629
EFL39636.1
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.627
EFL40273.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.621
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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