Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFL40429.1LacI-family transcriptional regulator. (370 aa)    
Predicted Functional Partners:
EFL38289.1
Regulatory protein, LacI.
  
     0.773
EFL43466.1
LacI family transcriptional regulator.
  
     0.769
EFL41895.1
Glutamate synthase large subunit.
    
 
 0.759
EFL40428.1
Serine/threonine phosphatase.
 
     0.756
EFL40427.1
Conserved hypothetical protein.
       0.661
EFL38677.1
HPr family phosphocarrier.
   
 
 0.620
pat
Histidinol-phosphate aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.
   
   0.591
EFL37481.1
PTS system, IIBC component.
    
 0.567
EFL39371.1
Syringomycin synthetase.
    
   0.557
pheT
phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
    
   0.556
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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