Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFL40444.1ABC transporter, ATP-binding protein. (303 aa)    
Predicted Functional Partners:
EFL40445.1
Integral membrane protein.
 
  0.981
EFL40443.1
Integral membrane protein.
 
  0.980
EFL40442.1
ABC transporter ATP-binding protein.
 
    
0.904
EFL40189.1
ABC transporter membrane-spanning protein.
 
 
 0.669
EFL40190.1
ABC transporter membrane-spanning protein; Truncated CDS.
 
 
 0.665
EFL41289.1
ABC transporter ATP-binding protein; Truncated CDS.
 
      0.632
EFL40436.1
HAD-superfamily hydrolase, subfamily IIB.
   
   0.590
EFL40437.1
Conserved hypothetical protein.
       0.552
EFL40438.1
Conserved hypothetical protein.
       0.552
kptA
RNA 2'-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase.
       0.552
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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