STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL40468.1Transposase. (258 aa)    
Predicted Functional Partners:
EFL40076.1
Transposase.
 
     0.767
EFL42341.1
IS4 family Transposase; Truncated CDS; unextendable partial coding region.
  
     0.724
EFL43530.1
Transposase.
  
     0.722
EFL43251.1
IS4 family Transposase; Truncated CDS.
  
     0.715
EFL43524.1
IS4 family Transposase; Truncated CDS; unextendable partial coding region.
  
     0.713
EFL37330.1
Transposase, IS4.
  
     0.710
EFL43218.1
Transposase.
 
     0.699
EFL37296.1
Transposase.
 
     0.696
EFL37278.1
IS4 family transposase; Truncated CDS.
  
     0.664
EFL40034.1
Transposase; Truncated CDS.
  
     0.641
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.