STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL40504.1Stress responsive A/B Barrel Domain superfamily protein. (97 aa)    
Predicted Functional Partners:
EFL40503.1
RNA polymerase sigma-F factor; Belongs to the sigma-70 factor family.
       0.740
EFL40506.1
Conserved hypothetical protein.
 
     0.700
EFL42404.1
Conserved hypothetical protein.
  
     0.694
EFL40786.1
Conserved hypothetical protein.
  
     0.682
EFL40502.1
RNA polymerase sigma-F factor; Belongs to the sigma-70 factor family.
       0.662
EFL41595.1
Integral membrane protein.
  
     0.638
EFL41151.1
HNH endonuclease domain-containing protein; Overlaps another CDS with the same product name.
  
     0.634
EFL40507.1
Hypothetical protein.
       0.616
EFL37876.1
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase.
    
  0.595
EFL41844.1
DivIVA domain-containing protein.
  
     0.586
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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