Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL40541.1Integral membrane protein. (258 aa)    
Predicted Functional Partners:
EFL40542.1
ABC transporter, ATP-binding subunit.
 
 
 0.983
EFL40539.1
DNA-binding response regulator.
 
   
 0.899
EFL40540.1
Two-component system sensor kinase.
 
  
 0.874
EFL39057.1
ABC transporter transmembrane protein.
 
 
 0.481
EFL39059.1
ABC transporter integral membrane subunit.
 
 
 0.463
EFL42605.1
ABC transport system integral membrane protein.
 
 
 0.422
EFL38100.1
CAAX amino protease.
   
    0.419
EFL42985.1
Abortive infection protein.
   
    0.419
EFL41289.1
ABC transporter ATP-binding protein; Truncated CDS.
 
 
 0.415
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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