STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL40542.1ABC transporter, ATP-binding subunit. (320 aa)    
Predicted Functional Partners:
EFL40541.1
Integral membrane protein.
 
 
 0.983
EFL40539.1
DNA-binding response regulator.
 
   
 0.914
EFL40540.1
Two-component system sensor kinase.
 
   
 0.821
EFL41658.1
Multidrug ABC transporter permease.
  
 
 0.628
EFL40189.1
ABC transporter membrane-spanning protein.
  
 
 0.617
EFL40190.1
ABC transporter membrane-spanning protein; Truncated CDS.
  
 
 0.617
EFL41688.1
ABC-transporter, transmembrane component.
  
 
 0.604
EFL37365.1
Daunorubicin resistance transmembrane protein.
  
 
 0.593
EFL41999.1
ABC-type efflux system, permease.
  
 
  0.581
EFL40015.1
ABC-2 type transporter.
  
 
 0.580
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.