STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL40588.1Secreted transglycosylase. (336 aa)    
Predicted Functional Partners:
EFL38760.1
Sensor histidine kinase/response regulator; Overlaps another CDS with the same product name.
  
  
 0.789
EFL41596.1
Cell wall hydrolase/autolysin.
 
 
 0.767
EFL40584.1
Membrane protein.
 
     0.766
EFL40583.1
ATP/GTP-binding protein.
 
  
 0.755
EFL40589.1
Integral membrane protein.
       0.744
EFL40587.1
Integral membrane protein.
       0.725
EFL38759.1
Sensor histidine kinase/response regulator; Overlaps another CDS with the same product name.
  
  
 0.708
EFL40586.1
Integral membrane protein.
       0.668
EFL40151.1
NLP/P60-family secreted protein.
 
  
0.602
EFL41782.1
Secreted protein.
 
  
0.598
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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