Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFL40602.1Integral membrane protein. (247 aa)    
Predicted Functional Partners:
EFL40601.1
RNA polymerase ECF-subfamily sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
   0.966
EFL40603.1
ABC transport system transmembrane protein; Unextendable partial coding region.
 
     0.885
EFL38670.1
PE-PGRS family protein.
  
     0.705
EFL43099.1
Conserved hypothetical protein.
  
     0.644
EFL40299.1
Membrane protein.
  
     0.566
EFL40480.1
N- superfamily bifunctional DNA primase/polymerase.
 
     0.561
EFL41868.1
Conserved hypothetical protein.
  
     0.555
EFL39481.1
Membrane protein.
  
     0.549
EFL38668.1
Conserved hypothetical protein.
  
     0.543
EFL38422.1
Cupin domain-containing protein.
  
 
  0.528
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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