STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL40607.1Pectinesterase/pectate lyase protein. (689 aa)    
Predicted Functional Partners:
EFL42043.1
Secreted lyase.
  
  
 0.965
EFL42712.1
Secreted lyase.
  
  
 0.965
EFL42039.1
Pectate lyase (PL); Unextendable partial coding region.
  
0.934
EFL41699.1
Ribosomal protein L18.
 
  
0.932
EFL42040.1
Secreted pectinesterase.
 
  
0.919
EFL42038.1
Conserved hypothetical protein.
  
 0.913
EFL38260.1
Conserved hypothetical protein; Truncated CDS; unextendable partial coding region.
  
 0.911
EFL37987.1
FG-GAP repeat domain-containing protein.
  
  
 0.907
EFL42401.1
Hypothetical protein.
  
  
 0.896
EFL42751.1
Cellulose-binding, family II, bacterial type.
 
  
 0.844
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.