Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL40616.1Secreted protein. (246 aa)    
Predicted Functional Partners:
EFL40619.1
Integral membrane protein.
       0.691
EFL40613.1
Hydrolase.
 
     0.633
EFL38653.1
Conserved hypothetical protein; Truncated CDS; unextendable partial coding region.
  
     0.624
EFL42136.1
Conserved hypothetical protein.
  
     0.612
EFL40618.1
Conserved hypothetical protein.
 
     0.608
EFL41864.1
Membrane protein.
  
     0.601
EFL38698.1
Conserved hypothetical protein.
  
     0.554
EFL40614.1
Molybdopterin converting factor.
       0.552
EFL40615.1
Integral membrane protein.
       0.552
EFL40817.1
Integral membrane protein.
  
     0.527
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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