Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL40618.1Conserved hypothetical protein. (137 aa)    
Predicted Functional Partners:
EFL40617.1
Thiosulfate sulfurtransferase.
 
  
 0.933
EFL40619.1
Integral membrane protein.
       0.878
EFL41439.1
Cytidine deaminase.
  
     0.768
EFL41141.1
Mov34/MPN/PAD-1 family protein.
  
     0.736
EFL39197.1
Anti-sigma factor (match).
  
     0.682
EFL40072.1
ATPase.
  
     0.648
EFL39503.1
Conserved hypothetical protein.
  
     0.636
EFL40616.1
Secreted protein.
 
     0.608
EFL39489.1
Membrane protein.
  
     0.604
EFL42107.1
CalR5 protein.
  
     0.599
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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