Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL40631.1GntR-family transcriptional regulator. (292 aa)    
Predicted Functional Partners:
EFL40632.1
Hydrolase.
 
     0.948
EFL40634.1
ATP-dependent DNA helicase.
       0.591
EFL40633.1
TetR family transcriptional regulator.
       0.586
EFL37343.1
AraC family transcriptional regulator.
   
    0.501
EFL41979.1
Conserved hypothetical protein.
  
     0.433
EFL41523.1
Membrane protein.
  
     0.431
EFL40630.1
Conserved hypothetical protein.
       0.430
EFL40462.1
GntR-family regulator.
  
     0.424
EFL37818.1
DNA-binding protein.
 
    0.423
EFL38422.1
Cupin domain-containing protein.
  
    0.410
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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