STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL40642.1PbsX family transcriptional regulator. (165 aa)    
Predicted Functional Partners:
EFL40643.1
Conserved hypothetical protein.
       0.783
EFL41789.1
Cyclase/dehydrase.
  
     0.760
EFL39246.1
ABC transporter, ATP-binding protein.
  
     0.727
EFL40072.1
ATPase.
  
     0.702
EFL40644.1
Membrane protein.
       0.700
EFL39946.1
Acyltransferase.
  
     0.689
EFL40649.1
Conserved hypothetical protein.
  
     0.679
EFL40073.1
Ion-transporting ATPase.
  
     0.637
EFL39659.1
Lipase.
  
     0.635
EFL39947.1
NAD-dependent epimerase/dehydratase.
  
     0.588
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.