Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL40644.1Membrane protein. (112 aa)    
Predicted Functional Partners:
EFL40643.1
Conserved hypothetical protein.
       0.753
EFL40642.1
PbsX family transcriptional regulator.
       0.700
EFL39495.1
Adenylate cyclase.
  
     0.562
EFL40173.1
Conserved hypothetical protein.
  
     0.504
EFL42413.1
Membrane protein.
  
     0.490
EFL41813.1
Transcriptional regulatory protein.
  
     0.479
EFL41025.1
Conserved hypothetical protein.
  
     0.430
EFL39216.1
Conserved hypothetical protein.
  
     0.410
EFL39520.1
Conserved hypothetical protein.
  
     0.409
EFL40995.1
Two-component system sensor kinase.
  
     0.405
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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