STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL40685.1Diamine N-acetyltransferase. (157 aa)    
Predicted Functional Partners:
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
   
 
 0.907
EFL41248.1
Agmatinase; Belongs to the arginase family.
  
 
 0.898
EFL38491.1
Lysine/ornithine decarboxylase; Unextendable partial coding region; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
    
 0.897
EFL42472.1
Lysine monooxygenase.
     
 0.871
EFL40686.1
Reductase.
       0.799
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
 0.737
EFL37819.1
Aminotransferase, class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.700
EFL42639.1
Ornithine-oxo-acid transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.700
EFL40687.1
Diguanylate cyclase (GGDEF) domain-containing protein.
       0.674
EFL40985.1
orn/DAP/Arg decarboxylase, family 2.
    
 0.663
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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