Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL40765.1Helix-turn-helix domain-containing protein. (101 aa)    
Predicted Functional Partners:
EFL40766.1
RelE family toxin-antitoxin system, toxin component.
 
   
 0.950
EFL40172.1
RelE family toxin-antitoxin system, toxin component.
 
   
 0.789
EFL40658.1
RelE family toxin-antitoxin system, toxin component.
 
   
 0.789
EFL40767.1
Conserved hypothetical protein.
       0.563
EFL40768.1
Conserved hypothetical protein.
       0.563
EFL40769.1
propionyl-CoA carboxylase, beta subunit.
       0.563
EFL39367.1
Fumarate hydratase, class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
  0.512
EFL37538.1
Molybdate metabolism regulator protein; Unextendable partial coding region.
  
     0.480
vapC-3
PIN family toxin-antitoxin system, toxin component; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.453
EFL38537.1
Ferredoxin oxidoreductase, alpha subunit.
    
  0.428
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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