Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFL40807.1Conserved hypothetical protein. (134 aa)    
Predicted Functional Partners:
EFL40808.1
Secreted protein.
       0.871
EFL41895.1
Glutamate synthase large subunit.
    
 0.851
EFL42737.1
Electron transfer flavoprotein, beta subunit.
  
 0.788
EFL39367.1
Fumarate hydratase, class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
 0.772
EFL42738.1
Electron transfer flavoprotein, alpha subunit.
   
 0.753
EFL40331.1
phenylacetate-CoA oxygenase/reductase, PaaK subunit.
    
 0.705
EFL43279.1
phenylacetate-CoA oxygenase/reductase, PaaK subunit.
    
 0.705
EFL40668.1
CarD family transcriptional regulator.
   
    0.678
EFL41920.1
Ribosomal protein S1.
   
  
 0.600
EFL37485.1
Nitrate reductase, beta subunit.
    
   0.595
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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