Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL40850.1Conserved hypothetical protein. (149 aa)    
Predicted Functional Partners:
EFL39443.1
Serine phosphatase.
 
   0.770
EFL38467.1
Conserved hypothetical protein.
  
   0.757
EFL40020.1
Conserved hypothetical protein.
  
     0.755
EFL39330.1
Regulatory protein.
  
   0.747
EFL38241.1
Regulatory protein.
 
   0.741
EFL39038.1
Conserved hypothetical protein.
  
     0.724
EFL41175.1
Conserved hypothetical protein.
  
   0.717
EFL43025.1
Conserved hypothetical protein; Belongs to the anti-sigma-factor antagonist family.
  
   0.704
EFL38995.1
Conserved hypothetical protein.
  
   0.700
EFL38438.1
Regulatory protein.
  
   0.694
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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