Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFL40855.1Conserved hypothetical protein. (253 aa)    
Predicted Functional Partners:
EFL40854.1
MarR-family transcriptional regulator.
    
 0.842
EFL40331.1
phenylacetate-CoA oxygenase/reductase, PaaK subunit.
     
 0.820
EFL43279.1
phenylacetate-CoA oxygenase/reductase, PaaK subunit.
     
 0.820
EFL42854.1
FldA protein.
    
 0.684
EFL39927.1
2-pyrone-4,6-dicarboxylate lactonase.
    
 0.683
EFL40214.1
Conserved hypothetical protein.
    
 0.648
EFL38496.1
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase.
  
  
 0.643
gcvT
Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine.
     
  0.597
EFL39874.1
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Belongs to the UbiD family.
     
  0.597
EFL37873.1
Protocatechuate 3,4-dioxygenase, beta subunit.
    
 0.581
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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