STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL40872.1Penicillin amidase. (944 aa)    
Predicted Functional Partners:
EFL40513.1
Penicillin amidase.
  
  
  0.868
EFL40271.1
Beta-lactamase.
     
  0.850
EFL43350.1
Beta lactamase.
     
  0.850
EFL40871.1
Sodium/hydrogen exchanger family protein.
       0.759
EFL40870.1
ABC transporter, permease.
       0.674
EFL40869.1
Type I antifreeze protein.
       0.650
EFL40868.1
Methylthioadenosine phosphorylase; Purine nucleoside phosphorylase involved in purine salvage.
       0.632
EFL37539.1
Condensation domain-containing protein; Unextendable partial coding region.
  
  
 0.598
EFL37540.1
Condensation domain-containing protein.
  
  
 0.598
EFL39371.1
Syringomycin synthetase.
  
  
 0.507
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.