Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFL40889.1Conserved hypothetical protein; Degrades oligopeptides; Belongs to the peptidase S41B family. (1090 aa)    
Predicted Functional Partners:
EFL38023.1
Tetratricopeptide repeat family protein.
   
 
 0.638
EFL40832.1
Conserved hypothetical protein.
   
 
 0.638
EFL39481.1
Membrane protein.
  
 
   0.637
EFL41868.1
Conserved hypothetical protein.
  
 
   0.607
EFL41711.1
Alpha-amylase.
    
  0.603
EFL40890.1
TetR-family transcriptional regulator.
       0.588
EFL41923.1
Tetratricopeptide repeat-containing protein.
    
   0.548
EFL42983.1
Conserved hypothetical protein.
    
   0.548
EFL39619.1
Conserved hypothetical protein.
  
     0.526
EFL42168.1
Conserved hypothetical protein.
  
     0.499
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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