Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFL40904.1Conserved hypothetical protein. (78 aa)    
Predicted Functional Partners:
EFL40903.1
traSA:integrase fusion protein; Belongs to the 'phage' integrase family.
 
   
 0.866
EFL41895.1
Glutamate synthase large subunit.
    
  0.862
EFL38537.1
Ferredoxin oxidoreductase, alpha subunit.
     
 0.811
EFL39776.1
Ferredoxin oxidoreductase, alpha subunit.
     
 0.811
EFL39367.1
Fumarate hydratase, class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
  0.803
EFL40863.1
PTS system, fructose-specific family, IIABC component.
     
  0.796
EFL39989.1
L-aspartate oxidase (LASPO) (Quinolinate synthetase B).
     
  0.789
EFL38040.1
methylmalonyl-CoA mutase.
     
  0.750
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
     
 0.575
EFL38107.1
Rhs element Vgr protein.
   
    0.547
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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