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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL40904.1Conserved hypothetical protein. (78 aa)    
Predicted Functional Partners:
EFL41895.1
Glutamate synthase large subunit.
    
  0.889
EFL40903.1
traSA:integrase fusion protein; Belongs to the 'phage' integrase family.
 
   
 0.870
EFL38537.1
Ferredoxin oxidoreductase, alpha subunit.
     
 0.772
EFL39776.1
Ferredoxin oxidoreductase, alpha subunit.
     
 0.772
EFL38107.1
Rhs element Vgr protein.
   
    0.551
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
     
 0.534
EFL38415.1
Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
     
 0.517
EFL40475.1
Replication initiator protein.
 
   
 0.476
EFL40121.1
Replication initiator protein.
 
   
 0.449
EFL40486.1
Conserved hypothetical protein.
  
     0.436
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.