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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL40954.1Extracellular deoxyribonuclease. (259 aa)    
Predicted Functional Partners:
EFL40955.1
Conserved hypothetical protein.
       0.870
EFL40953.1
Hypothetical protein.
       0.788
EFL39616.1
GMP synthase.
  
 
  0.615
EFL39617.1
GMP synthase domain-containing protein.
  
 
  0.615
EFL42012.1
Conserved hypothetical protein.
  
 
 0.604
EFL43447.1
Conserved hypothetical protein.
  
 
 0.604
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
       0.572
EFL38760.1
Sensor histidine kinase/response regulator; Overlaps another CDS with the same product name.
    
  0.535
EFL40961.1
Conserved hypothetical protein.
  
  
 0.528
EFL37459.1
Conserved hypothetical protein.
  
     0.447
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.