Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFL41199.1NAD-binding protein. (319 aa)    
Predicted Functional Partners:
EFL41198.1
Amidase; Belongs to the amidase family.
 
     0.858
EFL41201.1
Decarboxylase; Overlaps another CDS with the same product name.
 
     0.853
EFL41200.1
Decarboxylase; Truncated CDS; overlaps another CDS with the same product name.
 
     0.828
serC
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
  
 0.810
EFL39170.1
Oxoglutarate dehydrogenase (succinyl-transferring), E1 component.
     
 0.710
EFL42060.1
Aspartate aminotransferase.
 
 
 0.699
EFL38537.1
Ferredoxin oxidoreductase, alpha subunit.
  
 
 0.689
EFL39776.1
Ferredoxin oxidoreductase, alpha subunit.
  
 
 0.689
EFL42472.1
Lysine monooxygenase.
    
 0.684
EFL41886.1
Tryptophan synthase subunit alpha; Belongs to the TrpA family.
   
 
 0.668
Your Current Organism:
Streptomyces griseoflavus
NCBI taxonomy Id: 467200
Other names: S. griseoflavus Tu4000, Streptomyces griseoflavus Tu4000, Streptomyces griseoflavus str. Tu4000, Streptomyces griseoflavus strain Tu4000
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